Novel Genome Editing Approach Restores Hearing in Adult Preclinical Models with Genetic Deafness

Researchers say findings warrant further study in hopes of translation into clinical trials

A team led by Mass Eye and Ear researchers has demonstrated for the first time a successful restoration of hearing through a novel, in vivo genome editing approach in an adult mouse model with a form of inherited deafness caused by mutations in microRNA. The researchers note that mouse and human microRNAs have identical sequences, and accordingly, hope their new study lays the foundation for translational research into applications in humans with deafness caused by these types of mutations. 

The study, led by Zheng-Yi Chen, DPhil, an associate scientist in the Eaton-Peabody Laboratories at Mass Eye and Ear (a member of the Mass General Brigham healthcare system), was published July 10 in Science Translational Medicine.

"Our findings provide a promising pathway for developing treatments by editing for many forms of genetic hearing loss,” said Chen, who is the Ines and Fredrick Yeatts Chair in Otolaryngology at Mass Eye and Ear and an associate professor in Otolaryngology–Head and Neck Surgery at Harvard Medical School. “With further study, our intervention using genome editing could potentially halt or reverse hearing loss progression in affected individuals, including adults."

About one in 500 newborns suffer from genetic hearing loss and currently there are not any approved therapeutics to treat deafness. 

In the new study, researchers targeted a specific mutation in the microRNA-96 (MiR-96) gene that causes progressive hearing loss in mice and plays a crucial role in regulating gene expression in hair cells (sensory cells responsible for hearing) of mammals. In humans, this mutation has been identified as a cause of a form of dominant inherited progressive hearing loss called DFNA50. The researchers created a mouse model carrying the mutation that mirrored the progressive hearing loss in humans with DFNA50; by four weeks of age, these models exhibited complete hearing loss at high frequencies.

The team employed a CRISPR/Cas9 genome editing approach to target and disrupt this mutation, that was delivered to the inner ear through an injection of an adeno-associated virus (AAV) carrying the editing machinery. They compared injections at two time points, during early development and adult stages, and demonstrated robust preservation of auditory function in both cases long term, with earlier intervention proving most optimal.

The study also looked at safety of the AAV-mediated genome editing approach and found it had a good safety profile that includes little off-target effect and no detectable long-term integration of the AAV vector in the genome. “Our research suggested minimal potential risk and supports the feasibility of future clinical applications in humans,” said Wenliang Zhu, PhD, and physician-scientist Wan Du, MD, PhD, members of Chen’s lab at Mass Eye and Ear and first authors on the paper.

Chen and his team have designed a construct to contain all known microRNA mutations to be used in humans, and in conjunction with Mass General Brigham’s Gene and Cell Therapy Institute, plan to conduct IND-enabling studies in additional preclinical models in the hopes of moving this treatment approach into a first-in-human clinical trial. Studies like this one show the promise of gene therapy for treating conditions such as hearing loss. Mass General Brigham’s Gene and Cell Therapy Institute is helping to translate scientific discoveries made by researchers into first-in-human clinical trials and, ultimately, life-changing treatments for patients.

This latest research from Chen and colleagues marks a significant step forward in the field of gene therapy for hearing disorders, offering hope for future clinical trials aimed at restoring auditory function in people with genetic forms of hearing impairment. Chen and his collaborators have also conducted clinical trials looking at a different gene therapy approach for another form of deafness, DFNB9 caused by mutations in the OTOF gene. That clinical trial in China has demonstrated positive results in children treated in one and both ears. Chen hopes the technology developed in the OTOF trial, such as minimally invasive AAV delivery into the human inner ears, will accelerate the development of editing therapy into the clinic.

“With more than 150 forms of genetic deafness, our research offers further hope for patients that previously lacked any options beyond a cochlear implant,” said Chen. “These findings suggest a need for more rigorous studies building on proof-of-concept papers like these, to achieve our goal of developing different treatment approaches to target every one of these mutations.”

Authorship: In addition to Chen, Mass Eye and Ear co-authors on the study were Wenliang Zhu, Wan Du, Arun Prabhu Rameshbabu, Ariel Miura Armstrong, Stewart Silver, Yehree Kim and Wei Wei,. Other authors include Yilai Shu, Xuezhong Liu, Morag A Lewis, Karen P. Steel.

Funding: This work was primarily supported by National Institutes of Health (NIH) grants R01 DC016875, R01 DC019404, UG3TR002636, U24HG010423, UH3TR002636 to Chen, the Ines-Fredrick Yeatts Fund, NIH grants R01 DC019404 to Liu and Chen, R01DC012115 and R01DC005575 to Liu, a U.S. Department of Defense (DOD) grant RH220053 to Liu. Partial funding to Steel from the Wellcome Trust, grants 098051, 100669 and 089622.

Disclosures: Chen is a co-founder of Salubritas Therapeutics, and has financial interest in Decibel Therapeutics.

Paper cited: Zhu, W et al. “Targeted genome editing restores auditory function in adult mice with progressive hearing loss caused by a human microRNA mutation.” Science Translational Medicine. DOI: 10.1126/scitranslmed.adn0689

About Mass Eye and Ear

Massachusetts Eye and Ear, founded in 1824, is an international center for treatment and research and a teaching hospital of Harvard Medical School. A member of Mass General Brigham, Mass Eye and Ear specializes in ophthalmology (eye care) and otolaryngology–head and neck surgery (ear, nose and throat care). Mass Eye and Ear clinicians provide care ranging from the routine to the very complex. Also home to the world's largest community of hearing and vision researchers, Mass Eye and Ear scientists are driven by a mission to discover the basic biology underlying conditions affecting the eyes, ears, nose, throat, head and neck and to develop new treatments and cures. In the 2023–2024 “Best Hospitals Survey,” U.S. News & World Report ranked Mass Eye and Ear #4 in the nation for eye care and #7 for ear, nose and throat care. For more information about life-changing care and research at Mass Eye and Ear, visit our blog, Focus, and follow us on Instagram, Twitter and Facebook.